How to prevent ticket re-activation at reception of absence notices?

How to prevent ticket re-activation at reception of absence notices?

If we mail the customer and have to wait for his response, we set the status to 'Wait Customer'.
If customer as configured an auto-responder, the ticket gets thrown on the agents desk right seconds later and additionally the agent gets an email about customers response.

How can we prevent this?
Is there a way to detect auto-responders in the flow?
As I expect this to be a common issue, does your AI/ZIA intergration provide a solution for this?