Anyone else in the U.S. or anywhere else have the same issues I describe below? How did you resolve them? What is the best way to go about presenting, collecting and categorizing sales & use tax transactions?

The way it works is we have state tax and county tax.  So for any invoice, we collect tax for different tax authorities.  For payment, we submit one payment to the state and tell them how it needs to be divided and they take care on their part of sending the funds to the counties as needed.

In Books, we have a transaction showing up in the bank checking account, and it needs to match multiple transactions in Tax Payable account.  When I did it a month ago (can't quite recall how at this time) it actually broke down the transaction in the bank checking account into one for each tax authority.  When reconciling, it totally confused me thinking the one transaction was missing.

The other issue I have is invoices show a line item for each tax authority instead of showing one tax amount for the tax group.  ALL RETAILES IN US SHOW 1 AMOUNT yet Zoho says there is no way to do that in this system.