Changes to local folder structure not reflected in Zoho Docs (Cloud)

Changes to local folder structure not reflected in Zoho Docs (Cloud)

I am confused after having made certain changes to the folders and files by way of reorganising them my changes were not reflected in Zoho Docs as viewed thru the web. On checking the Folders selected in the Windows app settings I found that Docs was still syncing the old content structure and did not even reference or know of the new folders created.

My only solution was to disconnect Zoho Docs in the windows app and then reconnect but even that did not show the new files structure when I selected the original Zoho Docs location in my local drive. 

Strangely, after the sync started I checked and indeed it now has found the new structure and is syncing to that but of course I am now rescanning the complete Zoho Docs of some 15000 files.

What have I missed or done incorrectly and why did Zoho Docs not recognise the reorganised folder structure?

Thank you
Greg